PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2347
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 383aa    MW: 42094.1 Da    PI: 7.5014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2347genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-17120165147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W t Ed +l+++v+q+G  +W++Ia+++  gR++k+c++rw++ 
      Gh_D11G2347 120 RGHWRTAEDAKLKELVAQYGAQNWNLIAEHLE-GRSGKSCRLRWFNQ 165
                      899*****************************.***********996 PP

2Myb_DNA-binding51.91.7e-16172215146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +++ eE+e+l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ 
      Gh_D11G2347 172 RRAFSDEEEERLLSAHRVYGNK-WAMISRLFP-GRTDNAVKNHWHV 215
                      6789******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.376115166IPR017930Myb domain
SMARTSM007172.9E-14119168IPR001005SANT/Myb domain
PfamPF002497.7E-16120165IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-27120213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-26121173IPR009057Homeodomain-like
CDDcd001672.17E-13123164No hitNo description
PROSITE profilePS5129425.646167221IPR017930Myb domain
SMARTSM007171.5E-13171219IPR001005SANT/Myb domain
PfamPF002494.8E-13172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-19174220IPR009057Homeodomain-like
CDDcd001677.08E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSLPNLNNDF DCCSGVVKEM NFLAPPPILS PSVERDSTNP QMGFQIPSSL MEQHNKCLSF  60
EPLESRGTMR AAACYGKDGV LGDEKKGLAL NLGVEVDDVS NKNSGAVGGT KIGHTKLCSR  120
GHWRTAEDAK LKELVAQYGA QNWNLIAEHL EGRSGKSCRL RWFNQLDPRI NRRAFSDEEE  180
ERLLSAHRVY GNKWAMISRL FPGRTDNAVK NHWHVIMARK HREQSSFYRR RKPCSSSFAS  240
QAVPKGLDVT LQNNACSDQS TISSNRDESA STCTDLCLTP SSAEVPLGFF SSFSPVLQMG  300
PSRTKENGDF GKLYGSGNVL YQQQGPMGVA NGVDQSTHSS DSEVTAAEPV GTNKTNHSIE  360
SEDGNEKKIH NMRFIDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-351202207107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527280.0KM052728.1 Gossypium hirsutum LOF-like transcription factor LOF4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492437.10.0PREDICTED: myb-like protein Q
TrEMBLA0A0D2QZ010.0A0A0D2QZ01_G
STRINGPOPTR_0019s05740.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-70myb domain protein 105